Publications

Deel, H., Bucheli, S.R., Belk, A., Ogden, S., Lynne, A.M., Carter, D.O., Knight,R. and Metcalf, J.L. 2019. Using Microbiome Tools for Estimating the Postmorten Interval. In Microbial Forensics. 3rd Ed. Eds. Budowle, Schutzer,Breeze, Keim, and Morse. Academic Press, Burlington MA 01803

Belk, A., Xu, Z.Z., Carter, D.O., Lynne, A.M., Bucheli, S.R., Knight, R., and Metcalf, J.L. 2018. Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models. Genes. 9(104) DOI:10.3390/genes9020104
 

Burns, D.M.F., Harper, J.M., and Lynne, A.M. 2017. Age Does Not Affect the Induction of Mortality by the Foodborne Pathogen Salmonella enterica in Caenorhabditis elegans. Advances in Microbiology. DOI: 10.4236/aim.2017.710054
 

Hyde, E.R., Metcalf, J.L., Bucheli, S.R., Lynne, A.M., Knight, R. 2017.Microbial Communities Associated with Decomposing Corpses. In: ForensicMicrobiology. Eds. Carter, Metcalf, Tomberlin, and Benbow. John Wiley &Sons, Ltd, Chichester, UK.

Bucheli, S.R. and Lynne, A.M., 2016. The Microbiome of Human Decomposition: Studying microbial communities involved at every stage of cadaver decomposition is leading to a more precise understanding of the overall process. Microbe. 11(4):165-171.
 

Lynne, A.M., Foley, S.L. and Han, J. 2016. Salmonella: Properties and Occurrence. Encyclopedia of Food and Health. https://doi.org/10.1016/B978-0-12-384947-2.00608-5


Metcalf, J.L., Xu, Z.Z., Weiss, S., Lax, S., Van Treuren, W., Hyde, E.R., Song, S.J., Amir, A., Laresen, P., Sangwan, N., Haarmann, D.P., Humphrey, G.C., Ackerman, G., Thompson, L.R., Lauber, C., Bibat, A., Nicholas, C., Gebert, M.J., Petrosino, J.F., Reed, S.C., Gilbert, J.A., Lynne A.M., Bucheli, S.R., Carter, D.O, and Knight, R. 2015. A Universal Clock for Estimating the Postmortem Interval. Science. DOI 10.1126/science.aad2646
 

Hyde, E.R., Haarmann, D.P., Petrosino, J.F., Lynne, A.M., and Bucheli, S.R., 2014. Initial Insights into Bacterial Succession During Human Decomposition. International Journal of Legal Medicine. DOI 10.1007/s00414-014-1128-4
 

Zhang, X., Glennie, C.L., Bucheli, S.R., and Lynne, A.M. 2014. Terrestrial Laser Scanning and a Degenerated Cylinder Model to Determine Gross Morphological Change of Cadavers under Conditions of Natural Decomposition. Forensic
Science International. 241:35-45.

 

Bucheli, S.R., Z. Pan, C.L. Glennie, A.M. Lynne, D.P. Haarmann, J.M. Hill. 2014. Terrestrial Laser Scanning to Model Sunlight Irradiance on Cadavers Under Conditions of Natural Decomposition. International Journal of Legal Medicine.
128(4):725-732.

 

Hyde, E.R., Haarmann, D., Lynne, A.M., Bucheli, S.R., and Petrosino, J.F. 2013. The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of Bloat Stage of Decomposition. PloS ONE. 8(10): e77733.
Doi10.1371/journal.pone.0077733.

 

Gokulan, K., Khare, S., Rooney, A., Han, J., Lynne, A.M., and Foley, S.L. 2013. Impact of VirB4/D4 Type IV Secretion System Encoding Plasmids on Salmonella enterica Serovar Heidelberg Invasion, Persistence and Innate Immune Response in Macrophages and Epithelial Cells. PLoS ONE. 8(10): e77866. Doi.1371/journal.pone.0077866.
 

Han, J., Lynne, A.M., David, D.E., Tang, H., Xu, J., Nayak, R., Kaldhone, P., Logue, C.M., and Foley, S.L. 2012. DNA Sequence Analysis of Plasmids from Multidrug Resistant Salmonella enterica Serotype Heidelberg Isolates. PloS One.
7(12) E51160. Doi:10.1371/journal.pone.0051160.

 

Lewis, M.L., Bucheli, S.R., and Lynne, A.M. 2012. Use of Microthemes to Increase Writing Content for Introductory Science Laboratory. Journal of Microbiology and Biology Education. 13(1):74-77
 

Lynne, A.M., Kariyawasam, S., Wannemuehler, Y., Johnson, T. J., Johnson, S. J., Spitler, D. K., Moon, H. W., Jordan, D. M., Logue, C. M., Foley, S. L., and Nolan, L. K. 2012. Recombinant Iss as a Potential Vaccine for Avian Colibacillosis. Avian Diseases. 56(1):192-199.


Louden, B.C., Haarmann, D., Han, J., Foley, S.L., and Lynne, A.M. 2012. Characterization of Antimicrobial Resistance in Salmonella enterica serovar Typhimurium isolates from Food Animals. Food Research International. 45(2): 968-972.
 

Marrero-Ortiz, R., Han, J., Lynne, A.M., David, D.E., Stemper, M., Farmer, D., Burkhardt III W., Nayak, R. and Foley, S.L. 2012. Genetic Characterization of  Antimicrobial Resistance in Salmonella enterica Serovars Isolated from Dairy
Cattle. Food Research International. 45(2): 962-967.

 

Han, J., Lynne, A.M., David, D.E., Nayak, R., Foley, S.L. 2012. Plasmid Mediated Antimicrobial Resistance in Salmonella enterica Serovar Dublin. Food Research International. 45(2):931-934.

 

Powell, K.E., Garcia, M.C. and Lynne, A.M. 2012. Selective Pressure Potential of Antimicrobial Agents to Facilitate Spread of Resistance Plasmids in Salmonella. In: Salmonella: Classification, Genetics and Disease Outbreaks .Eds.Gotsiridze-Columbus, Nova Publishing Inc., New York.

 

Garner, A., Bavishi, A., Anderson, C.P., Choudhary, M., and Lynne, A.M. 2012.Genome Comparisons of Salmonella: Functional Conservation of Genes within Pathogenicity Islands. In Salmonella: Classification, Genetics and DiseaseOutbreaks. Eds. Gotsiridze-Columbus, Nova Publishing Inc., New York.

 

Foley, S.L, Lynne A.M., Nayak, R., Shukla, S.K. and Johnson, T.J. 2012. Subtyping of Bacterial Foodborne Pathogens: Phenotypic Methods and anIntroduction to Molecular Methods In: Molecular Typing Methods for TrackingF oodborne Microorganisms. Eds. Foley, S.L., Nayak, R., Johnson, T.J., andShukla, S. Nova Publishing Inc., New York.

 

Lynne, A.M., and Louden, B.C. 2012. PCR-based Genotyping: Virulence andAntimicrobial Resistance Genes. In: Molecular Typing Methods for Tracking Foodborne Microorganisms. Eds. Foley, S.L., Nayak, R., Johnson, T.J., and Shukla, S. Nova Publishing Inc., New York.

Louden, B.C., Haarmann, D. and Lynne A.M. 2011. Use of Blue Agar CAS Assay for Siderophore Detection. Journal of Microbiology and Biology Education. 12(1):51-53

Foley, S. L. Ge, B., Schroeder, C. M., and Lynne, A. M. 2011. Pathogen Elimination: Antibiotic and Disinfectant Use and the Development of Resistance. In: Techniques for the Study of Hospital Acquired Infection. Eds. Zervos, M.,Simjee, S. Chen, A. Y., and Foley, S. L. John Wiley and Sons Publishers, NewYork.


Han, J., David, D.E., Deck, J. Lynne, A.M., Kaldhone, P., Nayak, R., Stefanova, R., and Foley, S.L. 2011. Comparison of Salmonella enterica serovar Heidelberg Isolated from Human Patients. Journal of Clinical Microbiology. 49(3):1130-33
 

Johnson, T.J., Thorsness, J.L., Anderson, C.P., Lynne, A.M., Foley, S.L., Han, J., Fricke, W.F., McDermott, P.F., White, D.G., Khatri, M., Stell, A.L., Flores, C., and Singer, R.A. 2010. Horizontal Gene Transfer has Resulted in a Dominant
Avian Clonal Trype of Salmonella enterica serovar Kentucky. PLoS ONE 5(12): e15524. doi:10.1371/journal.pone.0015524

 

David, D.E., Lynne, A.M., Han, J., and Foley, S.L. 2010. Evaluation of Virulence Factor Profiling in the Characterization of Veterinary Escherichia coli Isolates. Appl. Environ. Microbiol. 76(22):7509-13.
 

Foley, S. L., Lynne, A. M., and Nayak, R. 2009. Molecular Typing Methodologies for Microbial Source Tracking and Epidemiological Investigations of Bacterial Foodborne Pathogens. Infect. Genet. Evol. 9(4):430-40.
 

Lynne, A.M., Dorsey, L.L., David, D, Kaldhone, P., and Foley, S.L. 2009. Characterization of antimicrobial resistance in host-adapted Salmonella enterica. Int. J. Antimicrob Agents. 34(2):169-72.
 

Lynne, A.M., Kaldhone, P., White, D.G., and Foley, S.L. 2009. Characterization of antimicrobial resistance in Salmonella enterica serotype Heidelberg from veterinary sources. Foodborne Pathog Dis. 6(2):207-15
 

Kaldhone, P., Nayak, R., Lynne, A.M., McDermott, P.F., Logue, C.M., and Foley, S.L. 2008. Characterization of Salmonella enterica serovar Heidelberg from pre-harvest and post-harvest turkey sources. Appl Environ Microbiol.
74(16):5038-46.

 

Foley, S.L. and Lynne, A.M. 2008. Food Animal-Associated Salmonella Challenges: Pathogenicity and Antimicrobial Resistance. J Anim Sci. 86(14 Suppl):E173-87.
 

Foley, S.L, Lynne, A.M, and Nayak, R. 2008. Salmonella Challenges: Prevalence in Swine and Poultry and Potential Pathogenicity of Such Isolates. J Anim Sci. 86(14 Suppl):E149-62.
 

Lynne, A.M., Rhodes-Clark, B.S., Bliven, K., Zhao, S. and Foley, S.L. 2008. Antimicrobial Resistance Genes Associated with Salmonella enterica serovar Newport Isolates from Veterinary Sources. Antimicrobial Agents and
Chemotherapy. 52(1):353-356

 

Foley, S. L, Lynne, A.M., and Nayak, R. 2008. Molecular Typing Methods of Enterobacteriaceae. In: Molecular Typing in Bacterial Infections. Eds. McKee, M. and de Fillipis, I. Humana Press, Totowa, NJ. Chapter submitted.

Lynne, A.M., Skyberg, J.A., Logue, C.L., Doetkott, C., Foley, S.L., and Nolan, L.K. 2007. Characterization of a Series of Transconjugant Mutants of an Avian Pathogenic Escherichia coli Isolate for Resistance to Serum Complement. Avian
Diseases 51:771-776.

 

Johnson, T.J., Kariyawasam, S., Wannemuehler, Y., Mangiamele, P., Johnson, S.J., Doetkott, C., Skyberg, J.A., Lynne, A.M. and Nolan, L.K. 2007. Genome Sequence of Avian Pathogenic Escherichia coli Strain O1:K1 Shares Strong
Similarities with Human ExPEC Genomes. Journal of Bacteriology. 189(8)3228- 3236.

 

Lynne, A.M., Skyberg, J.A., Logue, C.M., and Nolan, L.K. 2007. Detection of Iss and Bor on the Surface of Escherichia coli. Journal of Applied Microbiology. 102(3):660-666.
 

Lynne, A.M., Foley, S.L., and Nolan, L.K., 2006. Characterization of Monoclonal Antibodies Against Avian Escherichia coli Iss. Avian Diseases. 50:445-449.


Lynne, A.M., Foley, S.L., and Nolan L.K., 2006. Immune Response to Recombinant Escherichia coli Iss Protein in Poultry. Avian Diseases 50:273-276.

 

Nolan, L.K., Horne, S.M., Giddings, C.W., Foley, S.L., Johnson, T.J., Lynne, A.M., and Skyberg, J., 2003. Resistance to Serum Complement, iss, and Virulence of Avian Escherichia coli. Veterinary Research Communications
27:101-110.


Jeffrey, J.S., Nolan, L.K., Tonooka, K.H, Wolfe, S, Giddings, C.W., Horne, S.M., Foley, S.L., Lynne, A.M., Ebert, J.O., Elijah, L.M., Bjorklund, G., PfaffMcDonough, S.J., Singer, R.S., and Doetkott, C., 2002. Virulence Factors of
Escherichia coli from Cellulitis or Colisepticemic Lesions in Chickens. Avian Disease 46:48-52